Although I'm not promising we'll do all or even most of these things, here are some first thoughts on what a truly transparent media organization would do. (Some of these are based on my experience in open-sourcing my book research on this site, which worked great. Why not apply the same lessons to a magazine?)

Twee is a simple markup language for TiddlyWikis. It was invented when Chris spilled water on his laptop's trackpad, which knocked it out of commission temporarily, and he still wanted to work on his TiddlyWiki. It's evolved into a language for creating interactive stories.
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The easiest way to get started with Twee is to download Tweebox below. It's a compiler for Twee files that runs right in your Web browser. It also comes with an online manual that explains step-by-step how to write a story with Twee.
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Jonah is a format for displaying interactive stories created with Twee. Like Twinkie, it is a stripped-down version of TiddlyWiki, but it goes even further — stripping away everything except the flow of your story. It's designed to look elegant but generic enough to suit almost any story, and comes with a set of macros designed to make writing interactive stories easy.

StumbleUpon will lift the embargo on StumbleVideo, a service that automatically finds videos matching your interests. The site doesn’t require the StumbleUpon toolbar - you can simply watch videos pulled from MySpace Video, Google Video and YouTube, clicking on the “thumbs up” or “thumbs down” to show whether you liked the clip. Once you’ve rated, click “Stumble!” to move to the next video; think of it as Hot or Not for videos.

The service logs all your ratings in the “history” section, and you can register with StumbleUpon to have that data saved in your account. Just like Pandora or Last.fm, StumbleVideo uses your ratings to find more videos you might like, and it also allows you to email a link to your friends...